iBOL BOLD (http://www.boldsystems.org) | EarthCape Documentation

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iBOL BOLD (http://www.boldsystems.org)

This integration is in testing mode and will evolve according to user requests

Use case

Manage field and lab samples in EarthCape database, send samples to BOLD, download BOLD data back to the research database

API

http://www.boldsystems.org/index.php/API_Public/combined

Fields

DnaExtract.BoldBin
DnaExtract.BoldRecordId
Attachment.BoldMediaId
Attachment.BoldTraceFileId

Actions

DnaExtract -> Download BOLD (downloads BOLD record information if BOLDRecordId is present. Sequence and records are attached to DnaExtract)

Fields currently downloaded

DnaExtract.BoldRecordId API PARAM
DnaExtract.BoldBin (bin_uri)
DnaExtract.Unit.TaxonomicName
Attachment.BoldTraceFileId (trace_id) KEY
Attachment.ID (trace_id)
Attachment.Name (trace_name)
Attachment.BoldMediaId
Attachment.FileUrl (trace_link)
Attachment.Date (run_date)
Sequence.Name (sequenceID) KEY
Sequence.Marker (markercode)
Sequence.Nucleotides (nucleotides)
Sequence.DnaExtract
Sequence.Unit
Sequence.Genbank (genbank_accession)
Marker.Name (markercode)

Future plans

Add output template view for BOLD submission sample sheet